Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG67724.1 | SDH16836.1 | SAMN04487975_101164 | SAMN04487975_103126 | PELOTA RNA binding domain-containing protein. | Small subunit ribosomal protein S1. | 0.799 |
SDG67724.1 | SDH23617.1 | SAMN04487975_101164 | SAMN04487975_103301 | PELOTA RNA binding domain-containing protein. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.609 |
SDG67724.1 | infB | SAMN04487975_101164 | SAMN04487975_103248 | PELOTA RNA binding domain-containing protein. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.971 |
SDG67724.1 | nusA | SAMN04487975_101164 | SAMN04487975_103251 | PELOTA RNA binding domain-containing protein. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.845 |
SDG67724.1 | rpsO | SAMN04487975_101164 | SAMN04487975_103243 | PELOTA RNA binding domain-containing protein. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.984 |
SDG67724.1 | truB | SAMN04487975_101164 | SAMN04487975_103245 | PELOTA RNA binding domain-containing protein. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.974 |
SDH16836.1 | SDG67724.1 | SAMN04487975_103126 | SAMN04487975_101164 | Small subunit ribosomal protein S1. | PELOTA RNA binding domain-containing protein. | 0.799 |
SDH16836.1 | SDH21794.1 | SAMN04487975_103126 | SAMN04487975_103249 | Small subunit ribosomal protein S1. | Ribosomal protein L7Ae. | 0.799 |
SDH16836.1 | SDH23617.1 | SAMN04487975_103126 | SAMN04487975_103301 | Small subunit ribosomal protein S1. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.923 |
SDH16836.1 | SDI49082.1 | SAMN04487975_103126 | SAMN04487975_11851 | Small subunit ribosomal protein S1. | Large subunit ribosomal protein L7A. | 0.799 |
SDH16836.1 | guaA | SAMN04487975_103126 | SAMN04487975_104251 | Small subunit ribosomal protein S1. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.777 |
SDH16836.1 | infB | SAMN04487975_103126 | SAMN04487975_103248 | Small subunit ribosomal protein S1. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.877 |
SDH16836.1 | nusA | SAMN04487975_103126 | SAMN04487975_103251 | Small subunit ribosomal protein S1. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.900 |
SDH16836.1 | rpsO | SAMN04487975_103126 | SAMN04487975_103243 | Small subunit ribosomal protein S1. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.990 |
SDH16836.1 | truB | SAMN04487975_103126 | SAMN04487975_103245 | Small subunit ribosomal protein S1. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.901 |
SDH21794.1 | SDH16836.1 | SAMN04487975_103249 | SAMN04487975_103126 | Ribosomal protein L7Ae. | Small subunit ribosomal protein S1. | 0.799 |
SDH21794.1 | SDH23617.1 | SAMN04487975_103249 | SAMN04487975_103301 | Ribosomal protein L7Ae. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.667 |
SDH21794.1 | infB | SAMN04487975_103249 | SAMN04487975_103248 | Ribosomal protein L7Ae. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.997 |
SDH21794.1 | nusA | SAMN04487975_103249 | SAMN04487975_103251 | Ribosomal protein L7Ae. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.981 |
SDH21794.1 | rbfA | SAMN04487975_103249 | SAMN04487975_103246 | Ribosomal protein L7Ae. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.794 |
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