STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH59162.1Hypothetical protein. (104 aa)    
Predicted Functional Partners:
SDI30294.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
     0.606
SDI57517.1
NUDIX domain-containing protein.
  
     0.582
SDH51165.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
  
     0.573
SDG62823.1
Putative copper resistance protein D.
  
     0.563
SDG64818.1
Protein of unknown function.
  
     0.541
SDG77311.1
Hypothetical protein.
  
     0.503
SDI39472.1
Putative membrane protein.
  
     0.502
SDI15528.1
Transporter family-2 protein.
  
     0.500
SDH32401.1
Uncharacterized membrane protein.
  
     0.486
SDG77538.1
Hypothetical protein.
  
     0.485
Your Current Organism:
Planomicrobium glaciei
NCBI taxonomy Id: 459472
Other names: CGMCC 1.6846, JCM 15088, P. glaciei, Planomicrobium glaciei Zhang et al. 2009, Planomicrobium sp. 0423, strain 0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.