STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH74364.12'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family. (172 aa)    
Predicted Functional Partners:
SDH74333.1
Enterochelin esterase.
 
  
 0.920
SDH74411.1
Predicted N-acyltransferase, GNAT family.
 
    0.867
SDH65500.1
Disulfide oxidoreductase YuzD.
  
     0.727
SDH89443.1
YwpF-like protein.
  
     0.646
SDI55509.1
Protein of unknown function.
  
     0.640
SDI60228.1
Protein of unknown function.
  
     0.635
SDH61329.1
YtkA-like.
  
     0.633
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
     
 0.593
SDH60422.1
YhzD-like protein.
  
     0.584
SDH70770.1
YugN-like family protein.
  
     0.578
Your Current Organism:
Planomicrobium glaciei
NCBI taxonomy Id: 459472
Other names: CGMCC 1.6846, JCM 15088, P. glaciei, Planomicrobium glaciei Zhang et al. 2009, Planomicrobium sp. 0423, strain 0423
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