STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM53178.1Major Facilitator Superfamily protein. (404 aa)    
Predicted Functional Partners:
SDM53156.1
Transcriptional regulator, ArsR family.
 
     0.825
SDM50185.1
Predicted arabinose efflux permease, MFS family.
  
     0.571
SDM47877.1
Sugar phosphate permease.
  
     0.535
SDM95421.1
Homoserine dehydrogenase.
    
  0.514
SDM53138.1
Alkaline phosphatase D.
       0.500
SDN04847.1
Hypothetical protein.
  
     0.495
SDN28407.1
HlyD family secretion protein.
   
  0.486
SDN39676.1
Barrel-sandwich domain of CusB or HlyD membrane-fusion.
   
  0.486
SDN43051.1
Barrel-sandwich domain of CusB or HlyD membrane-fusion.
   
  0.486
SDM51662.1
Diamine N-acetyltransferase.
  
     0.483
Your Current Organism:
Fictibacillus solisalsi
NCBI taxonomy Id: 459525
Other names: Bacillus solisalsi, Bacillus solisalsi Liu et al. 2009, Bacillus sp. V11SED5, CGMCC 1.6854, F. solisalsi, Fictibacillus solisalsi (Liu et al. 2009) Glaeser et al. 2013, JCM 14863, KCTC 13181, strain YC1
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