Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM58076.1 | SDM67992.1 | SAMN04488137_0866 | SAMN04488137_1405 | Exonuclease SbcC. | 5'-3' exonuclease. | 0.986 |
SDM58076.1 | SDN37196.1 | SAMN04488137_0866 | SAMN04488137_4226 | Exonuclease SbcC. | DNA repair exonuclease SbcCD nuclease subunit. | 0.987 |
SDM58076.1 | SDN62357.1 | SAMN04488137_0866 | SAMN04488137_0082 | Exonuclease SbcC. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.544 |
SDM58076.1 | asnS | SAMN04488137_0866 | SAMN04488137_1836 | Exonuclease SbcC. | asparaginyl-tRNA synthetase. | 0.582 |
SDM58076.1 | polA | SAMN04488137_0866 | SAMN04488137_2450 | Exonuclease SbcC. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.986 |
SDM58076.1 | recA | SAMN04488137_0866 | SAMN04488137_1288 | Exonuclease SbcC. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.818 |
SDM58076.1 | sbcD | SAMN04488137_0866 | SAMN04488137_0865 | Exonuclease SbcC. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.999 |
SDM67992.1 | SDM58076.1 | SAMN04488137_1405 | SAMN04488137_0866 | 5'-3' exonuclease. | Exonuclease SbcC. | 0.986 |
SDM67992.1 | SDN08324.1 | SAMN04488137_1405 | SAMN04488137_3426 | 5'-3' exonuclease. | Endo-beta-N-acetylglucosaminidase D. | 0.986 |
SDM67992.1 | SDN37196.1 | SAMN04488137_1405 | SAMN04488137_4226 | 5'-3' exonuclease. | DNA repair exonuclease SbcCD nuclease subunit. | 0.995 |
SDM67992.1 | SDN62357.1 | SAMN04488137_1405 | SAMN04488137_0082 | 5'-3' exonuclease. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.998 |
SDM67992.1 | asnS | SAMN04488137_1405 | SAMN04488137_1836 | 5'-3' exonuclease. | asparaginyl-tRNA synthetase. | 0.976 |
SDM67992.1 | mutL | SAMN04488137_1405 | SAMN04488137_1299 | 5'-3' exonuclease. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.977 |
SDM67992.1 | mutS | SAMN04488137_1405 | SAMN04488137_1298 | 5'-3' exonuclease. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.982 |
SDM67992.1 | polA | SAMN04488137_1405 | SAMN04488137_2450 | 5'-3' exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.983 |
SDM67992.1 | recA | SAMN04488137_1405 | SAMN04488137_1288 | 5'-3' exonuclease. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.996 |
SDM67992.1 | sbcD | SAMN04488137_1405 | SAMN04488137_0865 | 5'-3' exonuclease. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.995 |
SDN08324.1 | SDM67992.1 | SAMN04488137_3426 | SAMN04488137_1405 | Endo-beta-N-acetylglucosaminidase D. | 5'-3' exonuclease. | 0.986 |
SDN08324.1 | SDN37196.1 | SAMN04488137_3426 | SAMN04488137_4226 | Endo-beta-N-acetylglucosaminidase D. | DNA repair exonuclease SbcCD nuclease subunit. | 0.987 |
SDN08324.1 | SDN62357.1 | SAMN04488137_3426 | SAMN04488137_0082 | Endo-beta-N-acetylglucosaminidase D. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.544 |
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