STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN25796.1Phytanoyl-CoA dioxygenase (PhyH). (279 aa)    
Predicted Functional Partners:
SDN25779.1
MFS transporter, SP family, arabinose:H+ symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.545
SDN25811.1
Protein N-acetyltransferase, RimJ/RimL family.
       0.495
SDM44421.1
Protein of unknown function.
  
     0.426
SDN39844.1
Protein of unknown function.
  
     0.426
SDN25297.1
Dipeptidase E; Belongs to the peptidase S51 family.
  
     0.402
Your Current Organism:
Fictibacillus solisalsi
NCBI taxonomy Id: 459525
Other names: Bacillus solisalsi, Bacillus solisalsi Liu et al. 2009, Bacillus sp. V11SED5, CGMCC 1.6854, F. solisalsi, Fictibacillus solisalsi (Liu et al. 2009) Glaeser et al. 2013, JCM 14863, KCTC 13181, strain YC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.