Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM87447.1 | SDN27447.1 | SAMN04488137_2358 | SAMN04488137_3875 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | L-threonine aldolase. | 0.644 |
SDM87447.1 | SDN30650.1 | SAMN04488137_2358 | SAMN04488137_4021 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Homocysteine S-methyltransferase. | 0.840 |
SDM87447.1 | folD | SAMN04488137_2358 | SAMN04488137_0850 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Methylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.829 |
SDM87447.1 | gcvT | SAMN04488137_2358 | SAMN04488137_2028 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.722 |
SDM87447.1 | glyA | SAMN04488137_2358 | SAMN04488137_0029 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.830 |
SDN03789.1 | SDN27447.1 | SAMN04488137_3194 | SAMN04488137_3875 | MFS transporter, DHA1 family, multidrug resistance protein B. | L-threonine aldolase. | 0.573 |
SDN27447.1 | SDM87447.1 | SAMN04488137_3875 | SAMN04488137_2358 | L-threonine aldolase. | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.644 |
SDN27447.1 | SDN03789.1 | SAMN04488137_3875 | SAMN04488137_3194 | L-threonine aldolase. | MFS transporter, DHA1 family, multidrug resistance protein B. | 0.573 |
SDN27447.1 | SDN30650.1 | SAMN04488137_3875 | SAMN04488137_4021 | L-threonine aldolase. | Homocysteine S-methyltransferase. | 0.746 |
SDN27447.1 | SDN37283.1 | SAMN04488137_3875 | SAMN04488137_4231 | L-threonine aldolase. | Sugar phosphate permease. | 0.631 |
SDN27447.1 | folD | SAMN04488137_3875 | SAMN04488137_0850 | L-threonine aldolase. | Methylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.626 |
SDN27447.1 | gcvPA | SAMN04488137_3875 | SAMN04488137_2027 | L-threonine aldolase. | Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.682 |
SDN27447.1 | gcvPB | SAMN04488137_3875 | SAMN04488137_2026 | L-threonine aldolase. | Glycine dehydrogenase subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.696 |
SDN27447.1 | gcvT | SAMN04488137_3875 | SAMN04488137_2028 | L-threonine aldolase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.711 |
SDN27447.1 | glyA | SAMN04488137_3875 | SAMN04488137_0029 | L-threonine aldolase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.639 |
SDN27447.1 | purU | SAMN04488137_3875 | SAMN04488137_2941 | L-threonine aldolase. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.624 |
SDN30650.1 | SDM87447.1 | SAMN04488137_4021 | SAMN04488137_2358 | Homocysteine S-methyltransferase. | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.840 |
SDN30650.1 | SDN27447.1 | SAMN04488137_4021 | SAMN04488137_3875 | Homocysteine S-methyltransferase. | L-threonine aldolase. | 0.746 |
SDN30650.1 | folD | SAMN04488137_4021 | SAMN04488137_0850 | Homocysteine S-methyltransferase. | Methylenetetrahydrofolate dehydrogenase (NADP+); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.922 |
SDN30650.1 | gcvPA | SAMN04488137_4021 | SAMN04488137_2027 | Homocysteine S-methyltransferase. | Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.908 |
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