STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN47428.1PDZ domain-containing protein. (285 aa)    
Predicted Functional Partners:
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
 
 0.782
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
 
 0.782
SDN47718.1
Protein of unknown function.
  
     0.741
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.721
SDN48986.1
NQR2, RnfD, RnfE family; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
  
     0.691
SDN47600.1
NQR2, RnfD, RnfE family; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
  
     0.690
SDM92958.1
Lamin Tail Domain.
 
  
 0.646
SDM71205.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.579
SDM70778.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.578
SDM47899.1
Proline iminopeptidase.
  
  
  0.540
Your Current Organism:
Fictibacillus solisalsi
NCBI taxonomy Id: 459525
Other names: Bacillus solisalsi, Bacillus solisalsi Liu et al. 2009, Bacillus sp. V11SED5, CGMCC 1.6854, F. solisalsi, Fictibacillus solisalsi (Liu et al. 2009) Glaeser et al. 2013, JCM 14863, KCTC 13181, strain YC1
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