STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN52289.1Transcriptional regulator, TetR family. (194 aa)    
Predicted Functional Partners:
SDN52268.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.837
SDN52253.1
AraC-type DNA-binding protein.
     
 0.579
SDN52311.1
Nuclease-related domain-containing protein.
       0.510
SDM91565.1
Transcriptional regulator, TetR family.
  
     0.475
SDN54304.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
  
     0.463
SDM51117.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.413
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
   
 
 0.404
SDN52233.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.403
Your Current Organism:
Fictibacillus solisalsi
NCBI taxonomy Id: 459525
Other names: Bacillus solisalsi, Bacillus solisalsi Liu et al. 2009, Bacillus sp. V11SED5, CGMCC 1.6854, F. solisalsi, Fictibacillus solisalsi (Liu et al. 2009) Glaeser et al. 2013, JCM 14863, KCTC 13181, strain YC1
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