STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN57300.1Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains. (410 aa)    
Predicted Functional Partners:
SDN01521.1
N-terminal domain of peptidoglycan hydrolase CwlO-containing protein.
 
  
 0.897
SDN01318.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
  
 0.893
rsmA
16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.829
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
 
   
 0.740
SDN28266.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
  
 
  0.708
SDM51900.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
  
 
  0.704
SDN57330.1
TatD DNase family protein.
     
 0.654
SDM63062.1
Uncharacterized conserved protein YlxW, UPF0749 family.
 
     0.648
SDM63078.1
Uncharacterized conserved protein YlxW, UPF0749 family.
 
     0.646
SDM63092.1
Small basic protein.
  
     0.622
Your Current Organism:
Fictibacillus solisalsi
NCBI taxonomy Id: 459525
Other names: Bacillus solisalsi, Bacillus solisalsi Liu et al. 2009, Bacillus sp. V11SED5, CGMCC 1.6854, F. solisalsi, Fictibacillus solisalsi (Liu et al. 2009) Glaeser et al. 2013, JCM 14863, KCTC 13181, strain YC1
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