STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UF70_0204Hypothetical protein. (325 aa)    
Predicted Functional Partners:
UF70_0205
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.791
UF70_1302
Putative protein YtpQ; Belongs to the UPF0354 family.
  
     0.752
UF70_1347
Low G+C gram positive nudix hydrolase YtkD.
 
     0.715
UF70_0206
Cysteinyl-tRNA synthetase related protein; Belongs to the UPF0374 family.
       0.713
UF70_0876
Hypothetical protein; Belongs to the UPF0342 family.
  
     0.711
rsbW
Serine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
  
     0.623
UF70_1298
Pyridoxamine 5'-phosphate oxidase.
  
     0.618
UF70_1498
RNA polymerase sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.617
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
   
 0.614
RsbU
Serine phosphatase RsbU, regulator of sigma subunit.
 
    0.611
Your Current Organism:
Staphylococcus pasteuri
NCBI taxonomy Id: 45972
Other names: ATCC 51129, CCUG 32420, CIP 103540, DSM 10656, S. pasteuri, strain BM9357
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