STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsDRibose ABC transport system, high affinity permease RbsD; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (134 aa)    
Predicted Functional Partners:
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.996
UF70_2105
Putative ribose uptake protein RbsU, GRP transporter family.
 
  
 0.826
UF70_0225
Fructokinase.
 
  
 0.670
UF70_2221
2-dehydro-3-deoxygluconate kinase.
  
  
 0.612
UF70_2427
Phage terminase, small subunit.
  
     0.441
UF70_2102
YDGG protein.
  
    0.440
UF70_2106
Hypothetical protein.
       0.427
UF70_2107
Hypothetical protein.
       0.408
UF70_0227
Sucrose operon repressor ScrR, LacI family.
 
  
 0.404
Your Current Organism:
Staphylococcus pasteuri
NCBI taxonomy Id: 45972
Other names: ATCC 51129, CCUG 32420, CIP 103540, DSM 10656, S. pasteuri, strain BM9357
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.