Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
com1 | dipZ | Lstg_0078 | Lstg_1320 | 27 kDa outer membrane protein. | Cytochrome C biogenesis protein. | 0.573 |
com1 | dsbB | Lstg_0078 | Lstg_1067 | 27 kDa outer membrane protein. | Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 0.852 |
com1 | dsbD | Lstg_0078 | Lstg_2301 | 27 kDa outer membrane protein. | Thiol:disulfide interchange protein. | 0.926 |
com1 | folK | Lstg_0078 | Lstg_0646 | 27 kDa outer membrane protein. | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | 0.624 |
com1 | glyQ | Lstg_0078 | Lstg_0079 | 27 kDa outer membrane protein. | Glycyl tRNA synthetase, alpha subunit. | 0.513 |
com1 | glyS | Lstg_0078 | Lstg_0080 | 27 kDa outer membrane protein. | glycyl-tRNA synthetase beta chain. | 0.513 |
com1 | lidC | Lstg_0078 | Lstg_2795 | 27 kDa outer membrane protein. | Thiol:disulfide interchange protein DsbD. | 0.930 |
com1 | polA | Lstg_0078 | Lstg_0803 | 27 kDa outer membrane protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.490 |
com1 | rpoH | Lstg_0078 | Lstg_1117 | 27 kDa outer membrane protein. | RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.432 |
com1 | uvrD | Lstg_0078 | Lstg_0077 | 27 kDa outer membrane protein. | DNA helicase II. | 0.507 |
dipZ | com1 | Lstg_1320 | Lstg_0078 | Cytochrome C biogenesis protein. | 27 kDa outer membrane protein. | 0.573 |
dipZ | dsbB | Lstg_1320 | Lstg_1067 | Cytochrome C biogenesis protein. | Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 0.452 |
dipZ | dsbD | Lstg_1320 | Lstg_2301 | Cytochrome C biogenesis protein. | Thiol:disulfide interchange protein. | 0.690 |
dipZ | lidC | Lstg_1320 | Lstg_2795 | Cytochrome C biogenesis protein. | Thiol:disulfide interchange protein DsbD. | 0.690 |
dsbB | com1 | Lstg_1067 | Lstg_0078 | Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | 27 kDa outer membrane protein. | 0.852 |
dsbB | dipZ | Lstg_1067 | Lstg_1320 | Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | Cytochrome C biogenesis protein. | 0.452 |
dsbB | polA | Lstg_1067 | Lstg_0803 | Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.416 |
dsbD | com1 | Lstg_2301 | Lstg_0078 | Thiol:disulfide interchange protein. | 27 kDa outer membrane protein. | 0.926 |
dsbD | dipZ | Lstg_2301 | Lstg_1320 | Thiol:disulfide interchange protein. | Cytochrome C biogenesis protein. | 0.690 |
folK | com1 | Lstg_0646 | Lstg_0078 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | 27 kDa outer membrane protein. | 0.624 |
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