truA protein (Legionella steigerwaltii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

truA

tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (262 aa)

Predicted Functional Partners:

truB

0.912

trpF

0.873

rpoA

0.828

mraW

0.827

trpA

0.797

trpB

0.790

fimV_1

0.776

moeZ_3

0.770

moeZ_4

0.769

rplQ

0.759

Your Current Organism:

Legionella steigerwaltii

NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fimV_1	trpA	Lstg_0188	Lstg_0194	Transmembrane Tfp pilus assembly protein FimV.	Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	0.411
fimV_1	trpB	Lstg_0188	Lstg_0193	Transmembrane Tfp pilus assembly protein FimV.	Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.	0.465
fimV_1	trpF	Lstg_0188	Lstg_0192	Transmembrane Tfp pilus assembly protein FimV.	N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.	0.465
fimV_1	truA	Lstg_0188	Lstg_0191	Transmembrane Tfp pilus assembly protein FimV.	tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.776
moeZ_3	moeZ_4	Lstg_0938	Lstg_2961	Thiazole biosynthesis adenylyltransferase ThiF.	Putative molybdenum cofactor synthesis protein 3.	0.998
moeZ_3	rplQ	Lstg_0938	Lstg_2608	Thiazole biosynthesis adenylyltransferase ThiF.	50S ribosomal protein L17.	0.410
moeZ_3	truA	Lstg_0938	Lstg_0191	Thiazole biosynthesis adenylyltransferase ThiF.	tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.770
moeZ_4	moeZ_3	Lstg_2961	Lstg_0938	Putative molybdenum cofactor synthesis protein 3.	Thiazole biosynthesis adenylyltransferase ThiF.	0.998
moeZ_4	truA	Lstg_2961	Lstg_0191	Putative molybdenum cofactor synthesis protein 3.	tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.769
mraW	truA	Lstg_1006	Lstg_0191	S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.	tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.827
rplQ	moeZ_3	Lstg_2608	Lstg_0938	50S ribosomal protein L17.	Thiazole biosynthesis adenylyltransferase ThiF.	0.410
rplQ	rpoA	Lstg_2608	Lstg_2607	50S ribosomal protein L17.	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rplQ	truA	Lstg_2608	Lstg_0191	50S ribosomal protein L17.	tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.759
rplQ	truB	Lstg_2608	Lstg_1427	50S ribosomal protein L17.	tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.729
rpoA	rplQ	Lstg_2607	Lstg_2608	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	50S ribosomal protein L17.	0.999
rpoA	truA	Lstg_2607	Lstg_0191	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.	0.828
rpoA	truB	Lstg_2607	Lstg_1427	DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.	0.695
trpA	fimV_1	Lstg_0194	Lstg_0188	Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	Transmembrane Tfp pilus assembly protein FimV.	0.411
trpA	trpB	Lstg_0194	Lstg_0193	Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.	0.999
trpA	trpF	Lstg_0194	Lstg_0192	Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.	0.998

page 1 of 3

Server load: low (36%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About