Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lstg_0269 | djlA | Lstg_0269 | Lstg_3243 | Putative iron-sulpher cluster proteins NifU. | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.979 |
| Lstg_0269 | dnaK | Lstg_0269 | Lstg_1744 | Putative iron-sulpher cluster proteins NifU. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.941 |
| Lstg_0269 | iscS | Lstg_0269 | Lstg_0268 | Putative iron-sulpher cluster proteins NifU. | Cysteine desulfurase. | 0.999 |
| Lstg_0269 | nsrR_2 | Lstg_0269 | Lstg_1176 | Putative iron-sulpher cluster proteins NifU. | Rrf2 family transporter protein. | 0.654 |
| Lstg_0269 | sufA | Lstg_0269 | Lstg_0270 | Putative iron-sulpher cluster proteins NifU. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.930 |
| Lstg_0269 | sufB | Lstg_0269 | Lstg_1177 | Putative iron-sulpher cluster proteins NifU. | Cysteine desulfurase. | 0.771 |
| Lstg_0269 | sufC | Lstg_0269 | Lstg_1178 | Putative iron-sulpher cluster proteins NifU. | Component of SufBCD complex, ATP-binding component of ABC superfamily. | 0.871 |
| Lstg_0269 | yfhQ | Lstg_0269 | Lstg_0267 | Putative iron-sulpher cluster proteins NifU. | Methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.802 |
| djlA | Lstg_0269 | Lstg_3243 | Lstg_0269 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Putative iron-sulpher cluster proteins NifU. | 0.979 |
| djlA | dnaK | Lstg_3243 | Lstg_1744 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.988 |
| djlA | grlA | Lstg_3243 | Lstg_3435 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.811 |
| djlA | iscS | Lstg_3243 | Lstg_0268 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Cysteine desulfurase. | 0.813 |
| djlA | nifU | Lstg_3243 | Lstg_1181 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | NifU family FeS assembly SUF system protein. | 0.979 |
| djlA | nsrR_2 | Lstg_3243 | Lstg_1176 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Rrf2 family transporter protein. | 0.424 |
| djlA | sufA | Lstg_3243 | Lstg_0270 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.824 |
| dnaK | Lstg_0269 | Lstg_1744 | Lstg_0269 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Putative iron-sulpher cluster proteins NifU. | 0.941 |
| dnaK | djlA | Lstg_1744 | Lstg_3243 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.988 |
| dnaK | grlA | Lstg_1744 | Lstg_3435 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.412 |
| dnaK | iscS | Lstg_1744 | Lstg_0268 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Cysteine desulfurase. | 0.747 |
| dnaK | nifU | Lstg_1744 | Lstg_1181 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | NifU family FeS assembly SUF system protein. | 0.969 |
page 1 of 4