Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_0347Hypothetical protein. (95 aa)    
Predicted Functional Partners:
Lstg_0348
Hypothetical protein.
     0.973
Lstg_0346
Hypothetical protein.
       0.768
Lstg_2679
Ankyrin repeat-containing protein.
  
     0.680
Lstg_1571
Taurine catabolism dioxygenase TauD, TfdA family.
  
    0.644
Lstg_0064
Ankyrin repeats (3 copies).
  
     0.638
Lstg_0605
Ankyrin repeat-containing protein.
  
     0.625
Lstg_3358
Prolyl oligopeptidase; Belongs to the UPF0255 family.
  
     0.598
Lstg_2843
Protein kinase domain protein.
  
     0.596
Lstg_1502
Pyoverdine biosynthesis protein PvcA.
  
     0.585
chiD
Chitinase.
  
     0.584
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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