Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
yrbFToluene transporter subunit: ATP-binding component of ABC superfamily protein. (265 aa)    
Predicted Functional Partners:
yrbD
Toluene transporter subunit: membrane component of ABC superfamily protein.
 
 0.999
yrbE
Toluene transporter subunit: membrane component of ABC superfamily protein.
 
 0.999
Lstg_0399
Anti-anti-sigma factor.
  
 0.996
mlaE
ABC transporter permease.
 
 0.995
ttg2D
Toluene tolerance protein Ttg2D.
 
 
 0.986
Lstg_0471
Mammalian cell entry related domain protein.
 
 0.976
Lstg_0472
ABC transporter ATP-binding protein.
     
  0.870
Lstg_0396
Putative NIF3-like protein 1.
 
     0.755
lptC
Lipopolysaccharide export system protein LptC.
     
 0.722
yrbA
BolA like protein; Belongs to the BolA/IbaG family.
     
 0.719
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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