STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phrADeoxyribodipyrimidine photolyase phrB; Belongs to the DNA photolyase family. (472 aa)    
Predicted Functional Partners:
Lstg_0482
Tryptophan-rich sensory protein.
 
  
 0.921
yeeZ
NAD-dependent epimerase/dehydratase.
     
 0.834
Lstg_2097
Naringenin-chalcone synthase.
    
   0.738
sodB
Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.680
Lstg_0481
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.599
Lstg_1585
Amine oxidase, flavin containing.
 
   
 0.443
Lstg_0485
Hypothetical protein.
       0.410
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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