STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_0564Poly(3-hydroxybutyrate) depolymerase. (440 aa)    
Predicted Functional Partners:
phbC_1-2
Poly-beta-hydroxybutyrate synthase.
 
  
 0.955
phbC_3
PHA synthase.
 
  
 0.833
phbC_1
PHA synthase.
 
  
 0.826
phbC_4
Polyhydroxyalkanoic synthase.
 
  
 0.825
phbC_2
PHA synthase.
 
  
 0.722
PhaR
PHB/PHA accumulation regulator DNA-binding domain protein.
 
   
 0.604
Lstg_0563
Acid-resistance membrane protein.
       0.531
Lstg_0565
Hypothetical protein.
       0.493
Lstg_1730
Sporulation domain-containing protein.
     
  0.422
clpX
ATP-dependent Clp protease, ATP binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.418
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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