Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lstg_0958 | yggR | Lstg_0958 | Lstg_0957 | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Transporter. | 0.575 |
| gmr_1 | lspE | Lstg_1778 | Lstg_0200 | Regulatory protein (GGDEF domain). | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | 0.535 |
| gmr_1 | lspF | Lstg_1778 | Lstg_1908 | Regulatory protein (GGDEF domain). | Type II secretory pathway protein LspF. | 0.490 |
| gmr_1 | pilB | Lstg_1778 | Lstg_2119 | Regulatory protein (GGDEF domain). | Pilus assembly protein PilB. | 0.535 |
| gmr_1 | pilC | Lstg_1778 | Lstg_2120 | Regulatory protein (GGDEF domain). | Pilus assembly protein PilC. | 0.490 |
| gmr_1 | pilM | Lstg_1778 | Lstg_0986 | Regulatory protein (GGDEF domain). | Tfp pilus assembly protein, ATPase PilM. | 0.449 |
| gmr_1 | yggR | Lstg_1778 | Lstg_0957 | Regulatory protein (GGDEF domain). | Transporter. | 0.546 |
| lspE | gmr_1 | Lstg_0200 | Lstg_1778 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Regulatory protein (GGDEF domain). | 0.535 |
| lspE | lspF | Lstg_0200 | Lstg_1908 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Type II secretory pathway protein LspF. | 0.987 |
| lspE | pilC | Lstg_0200 | Lstg_2120 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Pilus assembly protein PilC. | 0.959 |
| lspE | pilD | Lstg_0200 | Lstg_2121 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.947 |
| lspE | pilM | Lstg_0200 | Lstg_0986 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Tfp pilus assembly protein, ATPase PilM. | 0.539 |
| lspE | pilO | Lstg_0200 | Lstg_0984 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Tfp pilus assembly protein PilO. | 0.540 |
| lspE | pilQ | Lstg_0200 | Lstg_0982 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Type IV pilus (Tfp) assembly protein PilQ. | 0.606 |
| lspE | yggR | Lstg_0200 | Lstg_0957 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Transporter. | 0.619 |
| lspF | gmr_1 | Lstg_1908 | Lstg_1778 | Type II secretory pathway protein LspF. | Regulatory protein (GGDEF domain). | 0.490 |
| lspF | lspE | Lstg_1908 | Lstg_0200 | Type II secretory pathway protein LspF. | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | 0.987 |
| lspF | pilB | Lstg_1908 | Lstg_2119 | Type II secretory pathway protein LspF. | Pilus assembly protein PilB. | 0.987 |
| lspF | pilD | Lstg_1908 | Lstg_2121 | Type II secretory pathway protein LspF. | Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.951 |
| lspF | pilM | Lstg_1908 | Lstg_0986 | Type II secretory pathway protein LspF. | Tfp pilus assembly protein, ATPase PilM. | 0.593 |
page 1 of 5