pilQ protein (Legionella steigerwaltii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pilQ

Type IV pilus (Tfp) assembly protein PilQ. (699 aa)

Predicted Functional Partners:

pilN

0.998

pilP

0.997

pilM

0.996

pilO

0.994

Lstg_2814

0.964

lspD

0.855

aspS

0.851

pilE_1

0.830

pilE_2

0.819

pilZ_2

0.819

Your Current Organism:

Legionella steigerwaltii

NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lstg_2814	pilE_1	Lstg_2814	Lstg_1366	LysM domain-containing protein.	Type-IV pilin.	0.762
Lstg_2814	pilM	Lstg_2814	Lstg_0986	LysM domain-containing protein.	Tfp pilus assembly protein, ATPase PilM.	0.916
Lstg_2814	pilN	Lstg_2814	Lstg_0985	LysM domain-containing protein.	Tfp pilus assembly protein PilN.	0.917
Lstg_2814	pilO	Lstg_2814	Lstg_0984	LysM domain-containing protein.	Tfp pilus assembly protein PilO.	0.918
Lstg_2814	pilP	Lstg_2814	Lstg_0983	LysM domain-containing protein.	Tfp pilus assembly protein PilP.	0.773
Lstg_2814	pilQ	Lstg_2814	Lstg_0982	LysM domain-containing protein.	Type IV pilus (Tfp) assembly protein PilQ.	0.964
Lstg_2814	pilZ_2	Lstg_2814	Lstg_1944	LysM domain-containing protein.	Type 4 fimbrial biogenesis protein PilZ.	0.779
aspS	lspD	Lstg_2059	Lstg_0201	aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	Type II protein secretion LspD.	0.851
aspS	pilQ	Lstg_2059	Lstg_0982	aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	Type IV pilus (Tfp) assembly protein PilQ.	0.851
lspD	aspS	Lstg_0201	Lstg_2059	Type II protein secretion LspD.	aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.	0.851
lspD	pilQ	Lstg_0201	Lstg_0982	Type II protein secretion LspD.	Type IV pilus (Tfp) assembly protein PilQ.	0.855
pilE_1	Lstg_2814	Lstg_1366	Lstg_2814	Type-IV pilin.	LysM domain-containing protein.	0.762
pilE_1	pilE_2	Lstg_1366	Lstg_1798	Type-IV pilin.	Tfp pilus assembly protein, major type IV pilin class A; Belongs to the N-Me-Phe pilin family.	0.666
pilE_1	pilM	Lstg_1366	Lstg_0986	Type-IV pilin.	Tfp pilus assembly protein, ATPase PilM.	0.885
pilE_1	pilN	Lstg_1366	Lstg_0985	Type-IV pilin.	Tfp pilus assembly protein PilN.	0.852
pilE_1	pilO	Lstg_1366	Lstg_0984	Type-IV pilin.	Tfp pilus assembly protein PilO.	0.843
pilE_1	pilP	Lstg_1366	Lstg_0983	Type-IV pilin.	Tfp pilus assembly protein PilP.	0.843
pilE_1	pilQ	Lstg_1366	Lstg_0982	Type-IV pilin.	Type IV pilus (Tfp) assembly protein PilQ.	0.830
pilE_1	pilZ_2	Lstg_1366	Lstg_1944	Type-IV pilin.	Type 4 fimbrial biogenesis protein PilZ.	0.756
pilE_2	pilE_1	Lstg_1798	Lstg_1366	Tfp pilus assembly protein, major type IV pilin class A; Belongs to the N-Me-Phe pilin family.	Type-IV pilin.	0.666