Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilPTfp pilus assembly protein PilP. (178 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
 
 0.997
pilN
Tfp pilus assembly protein PilN.
 
  
 0.997
pilO
Tfp pilus assembly protein PilO.
 
  
 0.996
pilM
Tfp pilus assembly protein, ATPase PilM.
 
  
 0.983
pilE_1
Type-IV pilin.
  
  
 0.843
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
   
 0.832
Lstg_1362
Pre-pilin leader sequence (pilV).
  
  
 0.785
fimT
Type IV pre-pilin.
  
  
 0.779
Lstg_2814
LysM domain-containing protein.
  
     0.773
Lstg_1365
Type 4 fimbrial biogenesis protein PilY1.
  
  
 0.770
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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