Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilMTfp pilus assembly protein, ATPase PilM. (364 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
 0.999
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
 
 0.996
pilO
Tfp pilus assembly protein PilO.
 
 
 0.995
pilP
Tfp pilus assembly protein PilP.
 
  
 0.983
Lstg_2814
LysM domain-containing protein.
  
 
   0.916
uptC
Type II secretion system protein.
  
  
 0.887
pilE_1
Type-IV pilin.
 
   
 0.885
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
   
 0.864
pilC
Pilus assembly protein PilC.
 
 
 
 0.836
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.798
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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