Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lstg_1095 | Lstg_1155 | Lstg_1095 | Lstg_1155 | Zinc-finger domain protein. | Fatty acid desaturase. | 0.523 |
Lstg_1095 | Lstg_2006 | Lstg_1095 | Lstg_2006 | Zinc-finger domain protein. | Hypothetical protein. | 0.701 |
Lstg_1095 | Lstg_2140 | Lstg_1095 | Lstg_2140 | Zinc-finger domain protein. | Hypothetical protein. | 0.661 |
Lstg_1095 | Lstg_2169 | Lstg_1095 | Lstg_2169 | Zinc-finger domain protein. | Hypothetical protein. | 0.691 |
Lstg_1095 | amiB | Lstg_1095 | Lstg_1092 | Zinc-finger domain protein. | N-acetylmuramoyl-L-alanine amidase. | 0.535 |
Lstg_1095 | bioC | Lstg_1095 | Lstg_3234 | Zinc-finger domain protein. | Biotin synthase BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.692 |
Lstg_1095 | miaA | Lstg_1095 | Lstg_1094 | Zinc-finger domain protein. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.758 |
Lstg_1095 | nuoG | Lstg_1095 | Lstg_1439 | Zinc-finger domain protein. | NADH dehydrogenase I chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.536 |
Lstg_1095 | rfaQ | Lstg_1095 | Lstg_1096 | Zinc-finger domain protein. | Glycosyltransferase. | 0.770 |
Lstg_1095 | yjeF | Lstg_1095 | Lstg_1090 | Zinc-finger domain protein. | Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.535 |
Lstg_1155 | Lstg_1095 | Lstg_1155 | Lstg_1095 | Fatty acid desaturase. | Zinc-finger domain protein. | 0.523 |
Lstg_2006 | Lstg_1095 | Lstg_2006 | Lstg_1095 | Hypothetical protein. | Zinc-finger domain protein. | 0.701 |
Lstg_2006 | Lstg_2140 | Lstg_2006 | Lstg_2140 | Hypothetical protein. | Hypothetical protein. | 0.670 |
Lstg_2006 | Lstg_2169 | Lstg_2006 | Lstg_2169 | Hypothetical protein. | Hypothetical protein. | 0.676 |
Lstg_2006 | bioC | Lstg_2006 | Lstg_3234 | Hypothetical protein. | Biotin synthase BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.636 |
Lstg_2006 | nuoG | Lstg_2006 | Lstg_1439 | Hypothetical protein. | NADH dehydrogenase I chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.538 |
Lstg_2140 | Lstg_1095 | Lstg_2140 | Lstg_1095 | Hypothetical protein. | Zinc-finger domain protein. | 0.661 |
Lstg_2140 | Lstg_2006 | Lstg_2140 | Lstg_2006 | Hypothetical protein. | Hypothetical protein. | 0.670 |
Lstg_2140 | Lstg_2169 | Lstg_2140 | Lstg_2169 | Hypothetical protein. | Hypothetical protein. | 0.630 |
Lstg_2140 | bioC | Lstg_2140 | Lstg_3234 | Hypothetical protein. | Biotin synthase BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.511 |
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