STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_1235GH3 auxin-responsive promoter. (496 aa)    
Predicted Functional Partners:
hmp
Oxidoreductase, FAD-binding protein.
 
  
 0.838
epsL
Putative sugar transferase EpsL.
    
  0.727
Lstg_1863
acyl-CoA synthetase.
    
 0.549
lldD
FMN-dependent dehydrogenase.
       0.503
apc3
Acetophenone carboxylase gamma subunit.
    
  0.469
gabD1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.460
aldA
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.460
yneI
Aldehyde dehydrogenase.
    
  0.460
mmsA
Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH), oxidoreductase.
    
  0.460
ywdH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.460
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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