Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_1267Cytochrome c type biogenesis protein CycH. (134 aa)    
Predicted Functional Partners:
Lstg_0753
Hypothetical protein.
  
     0.771
Lstg_3184
Ankyrin repeats (3 copies).
  
     0.769
Lstg_2394
Hypothetical protein.
  
     0.726
recX-2
Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family.
  
     0.722
Lstg_0486
Outer membrane component of multidrug efflux pump.
  
     0.688
traI_2
Putative conjugative transfer protein TraI.
  
     0.663
cecC
Chemiosmotic efflux system C protein C.
  
     0.663
Lstg_2785
Type III restriction enzyme, res subunit.
  
     0.640
Lstg_0511
Serine/threonine-protein kinase.
  
     0.632
Lstg_3173
5' DNA primase TraC.
  
     0.624
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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