Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lstg_0054 | pbpE_1 | Lstg_0054 | Lstg_1317 | Hypothetical protein. | Beta-lactamase. | 0.582 |
| Lstg_1318 | pbpE_1 | Lstg_1318 | Lstg_1317 | Hypothetical protein. | Beta-lactamase. | 0.572 |
| Lstg_2884 | pbpE_1 | Lstg_2884 | Lstg_1317 | HD domain protein. | Beta-lactamase. | 0.545 |
| cpg2_1 | pbpE_1 | Lstg_1759 | Lstg_1317 | Carboxypeptidase G2. | Beta-lactamase. | 0.541 |
| ftsI | mrcA | Lstg_1004 | Lstg_0988 | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | 0.908 |
| ftsI | pbpE_1 | Lstg_1004 | Lstg_1317 | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Beta-lactamase. | 0.535 |
| ftsI | rodA | Lstg_1004 | Lstg_1920 | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.990 |
| guaA | pbpE_1 | Lstg_0295 | Lstg_1317 | GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Beta-lactamase. | 0.694 |
| guaA | pbpE_3 | Lstg_0295 | Lstg_0377 | GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Serine-type D-Ala-D-Ala carboxypeptidase. | 0.694 |
| mrcA | ftsI | Lstg_0988 | Lstg_1004 | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | 0.908 |
| mrcA | pbpE_1 | Lstg_0988 | Lstg_1317 | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | Beta-lactamase. | 0.530 |
| mrcA | rodA | Lstg_0988 | Lstg_1920 | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | Rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.882 |
| pbpE_1 | Lstg_0054 | Lstg_1317 | Lstg_0054 | Beta-lactamase. | Hypothetical protein. | 0.582 |
| pbpE_1 | Lstg_1318 | Lstg_1317 | Lstg_1318 | Beta-lactamase. | Hypothetical protein. | 0.572 |
| pbpE_1 | Lstg_2884 | Lstg_1317 | Lstg_2884 | Beta-lactamase. | HD domain protein. | 0.545 |
| pbpE_1 | cpg2_1 | Lstg_1317 | Lstg_1759 | Beta-lactamase. | Carboxypeptidase G2. | 0.541 |
| pbpE_1 | ftsI | Lstg_1317 | Lstg_1004 | Beta-lactamase. | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | 0.535 |
| pbpE_1 | guaA | Lstg_1317 | Lstg_0295 | Beta-lactamase. | GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.694 |
| pbpE_1 | mrcA | Lstg_1317 | Lstg_0988 | Beta-lactamase. | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | 0.530 |
| pbpE_1 | pbpE_3 | Lstg_1317 | Lstg_0377 | Beta-lactamase. | Serine-type D-Ala-D-Ala carboxypeptidase. | 0.656 |
page 1 of 2