STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_1367DNA internalization-related competence protein ComEC/Rec2. (810 aa)    
Predicted Functional Partners:
comF
Competence protein ComF.
 
  
 0.892
smf
Protein smf.
 
  
 0.867
Lstg_1362
Pre-pilin leader sequence (pilV).
 
   
 0.828
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.812
fimT
Type IV pre-pilin.
     
 0.769
pilE_1
Type-IV pilin.
 
   
 0.765
lspF
Type II secretory pathway protein LspF.
   
  
 0.740
pilC
Pilus assembly protein PilC.
   
  
 0.740
pilX
Tfp pilus assembly protein PilX.
     
 0.739
Lstg_1363
Tfp pilus assembly protein PilW.
 
    0.722
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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