STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_1402Sphingomyelin phosphodiesterase. (390 aa)    
Predicted Functional Partners:
ankK
Cardiac ankyrin repeat -containing protein K.
  
 
  0.820
Lstg_1685
Ankyrin repeat protein.
  
 
  0.801
Lstg_0353
Hypothetical protein.
 
  
  0.800
Lstg_2366
Cysteine protease.
  
 
  0.795
Lstg_2785
Type III restriction enzyme, res subunit.
 
     0.779
Lstg_1774
Ankyrin repeats (3 copies).
  
     0.773
Lstg_2810
Hypothetical protein.
 
     0.773
Lstg_0911
Coiled-coil protein.
  
     0.772
iraA
Small-molecule methyltransferase IraA.
  
     0.769
dacB_1
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
     0.769
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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