Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_1482Ankyrin repeat protein. (349 aa)    
Predicted Functional Partners:
Lstg_1863
acyl-CoA synthetase.
   
 0.819
Lstg_1812
Sulfite reductase.
  
 
  0.816
Lstg_1483
Serine/threonine protein kinase.
 
    0.772
Lstg_0834
Ankyrin repeats (3 copies).
  
     0.768
Lstg_2063
Ankyrin repeats (3 copies).
  
     0.755
Lstg_0064
Ankyrin repeats (3 copies).
  
     0.736
Lstg_2265
Ankyrin repeats (3 copies).
  
     0.724
Lstg_1072
Ankyrin repeats (3 copies).
  
     0.717
Lstg_0331
Hypothetical protein.
  
     0.687
Lstg_2435
Ankyrin repeat protein.
  
     0.655
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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