Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
alkB2Alkane monooxygenase. (350 aa)    
Predicted Functional Partners:
hmp
Oxidoreductase, FAD-binding protein.
  
 
 0.938
frmA
Alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
     
 0.878
Lstg_0616
Alcohol dehydrogenase.
     
  0.870
ywdH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.869
Lstg_2124
Sterol desaturase-related protein.
 
 
 0.790
fadH
2,4-dienoyl-CoA reductase.
  
   
 0.739
Lstg_1863
acyl-CoA synthetase.
  
 
 0.674
Lstg_2095
FAD dependent oxidoreductase.
  
 
 0.630
rubR
Rubredoxin.
 
 
 0.606
mdh_1
Alcohol dehydrogenase.
     
 0.594
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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