Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_1887Protein with a bacterial immunoglobulin-like domain protein. (650 aa)    
Predicted Functional Partners:
ftsK
DNA translocase FtsK.
    
 
 0.781
Lstg_1886
Hypothetical protein.
  
    0.763
Lstg_0931
LphB.
  
  
 0.645
Lstg_3386
Hypothetical protein.
  
 0.596
pepO
Metallopeptidase PepO, peptidase, M13 family.
 
    0.567
bprV
Serine protease; Belongs to the peptidase S8 family.
  
 0.528
aprX
Subtilisin-like serine protease.
  
 0.528
Lstg_1256
Hypothetical protein.
   
  0.523
ctpA_1
Carboxy-terminal protease; Belongs to the peptidase S41A family.
   
  0.523
Lstg_2930
Stigma-specific protein, Stig1.
  
  
  0.488
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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