Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lstg_2180 | Lstg_2182 | Lstg_2180 | Lstg_2182 | Hypothetical protein. | Hypothetical protein. | 0.532 |
Lstg_2180 | lrsB | Lstg_2180 | Lstg_2181 | Hypothetical protein. | Arsenite efflux membrane component-like protein. | 0.490 |
Lstg_2182 | Lstg_2180 | Lstg_2182 | Lstg_2180 | Hypothetical protein. | Hypothetical protein. | 0.532 |
Lstg_2182 | Lstg_2183 | Lstg_2182 | Lstg_2183 | Hypothetical protein. | Hypothetical protein. | 0.537 |
Lstg_2182 | lrsB | Lstg_2182 | Lstg_2181 | Hypothetical protein. | Arsenite efflux membrane component-like protein. | 0.750 |
Lstg_2182 | metG | Lstg_2182 | Lstg_2186 | Hypothetical protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.445 |
Lstg_2182 | nth | Lstg_2182 | Lstg_2184 | Hypothetical protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.421 |
Lstg_2182 | rnfB | Lstg_2182 | Lstg_2185 | Hypothetical protein. | Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.421 |
Lstg_2183 | Lstg_2182 | Lstg_2183 | Lstg_2182 | Hypothetical protein. | Hypothetical protein. | 0.537 |
Lstg_2183 | lrsB | Lstg_2183 | Lstg_2181 | Hypothetical protein. | Arsenite efflux membrane component-like protein. | 0.458 |
Lstg_2183 | metG | Lstg_2183 | Lstg_2186 | Hypothetical protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.549 |
Lstg_2183 | nth | Lstg_2183 | Lstg_2184 | Hypothetical protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.549 |
Lstg_2183 | rnfB | Lstg_2183 | Lstg_2185 | Hypothetical protein. | Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.549 |
lrsB | Lstg_2180 | Lstg_2181 | Lstg_2180 | Arsenite efflux membrane component-like protein. | Hypothetical protein. | 0.490 |
lrsB | Lstg_2182 | Lstg_2181 | Lstg_2182 | Arsenite efflux membrane component-like protein. | Hypothetical protein. | 0.750 |
lrsB | Lstg_2183 | Lstg_2181 | Lstg_2183 | Arsenite efflux membrane component-like protein. | Hypothetical protein. | 0.458 |
metG | Lstg_2182 | Lstg_2186 | Lstg_2182 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Hypothetical protein. | 0.445 |
metG | Lstg_2183 | Lstg_2186 | Lstg_2183 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Hypothetical protein. | 0.549 |
metG | nth | Lstg_2186 | Lstg_2184 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.844 |
metG | rnfB | Lstg_2186 | Lstg_2185 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.863 |
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