STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clcA_1Chloride channel protein. (423 aa)    
Predicted Functional Partners:
yciA
Hydrolase.
       0.683
Lstg_2204
Hypothetical protein.
       0.683
hoxN
High affinity nickel transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.469
yhgF
Transcriptional accessory protein.
       0.463
rsmC
Ribosomal RNA small subunit methyltransferase C.
       0.442
Lstg_2207
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane.
       0.442
pcp_1
Serine protease, subtilase family.
  
     0.434
nixA
High-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.405
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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