ompP1 protein (Legionella steigerwaltii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ompP1

Long-chain fatty acid transporter. (406 aa)

Predicted Functional Partners:

yaeT

0.705

yfiO

0.703

mip

0.690

Lstg_2369

0.421

Your Current Organism:

Legionella steigerwaltii

NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lstg_2369	ompP1	Lstg_2369	Lstg_2368	Putative lyase.	Long-chain fatty acid transporter.	0.421
mip	ompP1	Lstg_0447	Lstg_2368	Macrophage infectivity potentiator.	Long-chain fatty acid transporter.	0.690
mip	yaeT	Lstg_0447	Lstg_1699	Macrophage infectivity potentiator.	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.867
mip	yfiO	Lstg_0447	Lstg_0888	Macrophage infectivity potentiator.	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.844
ompP1	Lstg_2369	Lstg_2368	Lstg_2369	Long-chain fatty acid transporter.	Putative lyase.	0.421
ompP1	mip	Lstg_2368	Lstg_0447	Long-chain fatty acid transporter.	Macrophage infectivity potentiator.	0.690
ompP1	yaeT	Lstg_2368	Lstg_1699	Long-chain fatty acid transporter.	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.705
ompP1	yfiO	Lstg_2368	Lstg_0888	Long-chain fatty acid transporter.	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.703
yaeT	mip	Lstg_1699	Lstg_0447	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Macrophage infectivity potentiator.	0.867
yaeT	ompP1	Lstg_1699	Lstg_2368	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Long-chain fatty acid transporter.	0.705
yaeT	yfiO	Lstg_1699	Lstg_0888	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.993
yfiO	mip	Lstg_0888	Lstg_0447	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Macrophage infectivity potentiator.	0.844
yfiO	ompP1	Lstg_0888	Lstg_2368	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Long-chain fatty acid transporter.	0.703
yfiO	yaeT	Lstg_0888	Lstg_1699	Competence lipoprotein comL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.993