Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_3057Hypothetical protein. (128 aa)    
Predicted Functional Partners:
Lstg_3058
Topology modulation protein.
       0.779
Lstg_3056
Transposase IS3/IS911 family protein.
       0.668
iucD
L-lysine N6-monooxygenase.
  
 
 0.624
recX-2
Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family.
       0.553
Lstg_3060
Hypothetical protein.
       0.553
Lstg_3055
Integrase, catalytic region.
       0.534
hmp
Oxidoreductase, FAD-binding protein.
     
  0.481
pta
Phosphate acetyl/butaryl transferase.
    
 0.473
pdhB_2
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
     
  0.466
Lstg_1863
acyl-CoA synthetase.
  
 
 0.450
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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