Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_3089Hypothetical protein. (149 aa)    
Predicted Functional Partners:
Lstg_3090
Putative conjugative transfer protein TraU.
       0.792
Lstg_3093
Putative conjugative transfer protein TraF.
       0.774
Lstg_3087
Putative TrbI protein.
       0.770
Lstg_3092
Conjugal transfer mating pair stabilization protein TraN.
       0.767
traC_1
Putative conjugative transfer protein TraC.
       0.764
Lstg_3088
Putative conjugative transfer protein TraW.
       0.752
Lstg_3091
Putative conjugative transfer protein TrbC.
       0.748
Lstg_3094
Putative conjugative transfer protein TrbB.
       0.748
Lstg_3095
Putative conjugative transfer protein TraH.
       0.683
Lstg_3096
Putative sex pilus assembly and mating pair protein TraG.
       0.683
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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