STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traI_1Putative conjugative transfer protein TraI. (1956 aa)    
Predicted Functional Partners:
addA
UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
 0.967
traD_1
Putative conjugative transfer protein TraD.
 
   
 0.938
dnaN
DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...]
  
 
 0.906
Lstg_3096
Putative sex pilus assembly and mating pair protein TraG.
 
     0.883
Lstg_3095
Putative conjugative transfer protein TraH.
 
     0.870
Lstg_3092
Conjugal transfer mating pair stabilization protein TraN.
 
    0.867
Lstg_3093
Putative conjugative transfer protein TraF.
 
     0.862
Lstg_3084
Putative conjugative transfer protein TraB.
 
     0.844
Lstg_3088
Putative conjugative transfer protein TraW.
 
     0.830
Lstg_3090
Putative conjugative transfer protein TraU.
 
     0.789
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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