Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lstg_3350MATE efflux family protein. (625 aa)    
Predicted Functional Partners:
hit
Histidine triad (HIT) protein.
       0.791
Lstg_2843
Protein kinase domain protein.
  
     0.774
Lstg_2679
Ankyrin repeat-containing protein.
  
     0.770
Lstg_1404
Phospholipase/lecithinase/hemolysin.
  
     0.766
Lstg_3335
Hypothetical protein.
  
     0.764
Lstg_2959
Putative Glutathione synthetase ATP-binding domain-like protein.
  
     0.761
Lstg_1551
Cyclic nucleotide-binding protein.
  
     0.760
Lstg_0605
Ankyrin repeat-containing protein.
  
     0.752
Lstg_0955
Hypothetical protein.
  
     0.742
aaeB
P-hydroxybenzoic acid efflux pump subunit AaeB.
  
     0.739
Your Current Organism:
Legionella steigerwaltii
NCBI taxonomy Id: 460
Other names: ATCC 35302, CCUG 29674, CCUG 56441, CIP 103851, DSM 23076, JCM 7558, L. steigerwaltii, NCTC 11991, strain SC-18-C9
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