Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0018PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_0013 ErfK/YbiS/YcfS/YnhG family protein. (339 aa)    
Predicted Functional Partners:
Mnod_0017
PFAM: Extensin family protein; KEGG: met:M446_0012 extensin family protein.
 
     0.822
Mnod_5216
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_2959 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.704
Mnod_1876
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_0387 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.651
Mnod_4187
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_4450 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.646
Mnod_5200
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_4451 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.643
Mnod_2851
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_2711 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.638
Mnod_0016
PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: met:M446_0011 peptidyl-dipeptidase DCP.
       0.580
Mnod_2814
PFAM: Lytic transglycosylase catalytic; KEGG: met:M446_2397 lytic transglycosylase catalytic.
  
     0.411
Mnod_5194
KEGG: met:M446_4458 hypothetical protein.
  
     0.407
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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