Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Mnod_0024PFAM: protein of unknown function UPF0102; KEGG: met:M446_0021 hypothetical protein; Belongs to the UPF0102 family. (129 aa)    
Predicted Functional Partners:
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.853
Mnod_0026
PFAM: Extracellular ligand-binding receptor; KEGG: met:M446_0023 extracellular ligand-binding receptor.
       0.714
Mnod_0270
KEGG: met:M446_2339 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
  
    0.612
Mnod_1708
KEGG: met:M446_4814 phosphoribosyltransferase.
 
    0.593
Mnod_0023
KEGG: met:M446_0020 hypothetical protein.
       0.583
Mnod_3313
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: met:M446_4345 DNA protecting protein DprA.
 
  
 0.561
Mnod_5418
KEGG: met:M446_0209 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
  
 0.487
Mnod_5911
KEGG: met:M446_5286 hypothetical protein.
 
    0.464
Mnod_4715
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: met:M446_4200 flagellar motor switch protein FliM.
   
    0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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