Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_0048TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: met:M446_0048 MATE efflux family protein. (460 aa)    
Predicted Functional Partners:
Mnod_0047
PFAM: MaoC domain protein dehydratase; KEGG: met:M446_0047 dehydratase.
 
    0.864
Mnod_7286
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: met:M446_6001 glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.668
Mnod_6612
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.637
Mnod_2191
PFAM: Squalene/phytoene synthase; KEGG: met:M446_2494 squalene/phytoene synthase.
   
  
 0.595
Mnod_7143
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: met:M446_6350 squalene synthase HpnC.
   
  
 0.595
Mnod_7144
TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: met:M446_6349 squalene synthase HpnD.
   
  
 0.595
Mnod_0045
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: met:M446_0045 exonuclease RNase T and DNA polymerase III.
       0.486
Mnod_0046
PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: met:M446_0046 CBS domain-containing protein.
       0.486
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.472
Mnod_4460
PFAM: Cupin 2 conserved barrel domain protein; KEGG: met:M446_4530 cupin 2 domain-containing protein.
  
     0.417
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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