Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0067PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_4765 ABC transporter related. (502 aa)    
Predicted Functional Partners:
Mnod_0066
PFAM: inner-membrane translocator; KEGG: met:M446_4764 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.947
Mnod_0065
PFAM: inner-membrane translocator; KEGG: met:M446_4763 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.930
Mnod_0064
PFAM: Extracellular ligand-binding receptor; KEGG: met:M446_4762 extracellular ligand-binding receptor.
 
  
 0.864
Mnod_3243
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sit:TM1040_3254 periplasmic sensory protein associated with the TorRS two-component regulatory system.
  
 
 0.797
Mnod_4043
PFAM: regulatory protein LacI; KEGG: met:M446_4170 LacI family transcription regulator.
  
 
 0.797
Mnod_5026
PFAM: regulatory protein LacI; KEGG: met:M446_4170 LacI family transcription regulator.
  
 
 0.797
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
 
   
 0.532
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.520
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: met:M446_5319 phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
   
   0.482
Mnod_4191
PFAM: carbon starvation protein CstA; KEGG: met:M446_2942 carbon starvation protein CstA.
   
  
 0.477
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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