Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0101KEGG: met:M446_4739 ABC transporter substrate-binding protein. (427 aa)    
Predicted Functional Partners:
Mnod_0103
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4741 binding-protein-dependent transport systems inner membrane component.
 
 
 0.995
Mnod_0102
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4740 binding-protein-dependent transport systems inner membrane component.
 
  
 0.983
Mnod_0100
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: met:M446_4738 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.954
Mnod_4262
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2477 binding-protein-dependent transport systems inner membrane component.
  
 
 0.924
Mnod_6775
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_6381 ornithine carbamoyltransferase.
  
 
 0.890
Mnod_3649
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll6823 ABC transporter permease protein.
  
 
 0.760
Mnod_5914
PFAM: Asp/Glu/hydantoin racemase; KEGG: met:M446_5283 Asp/Glu/hydantoin racemase.
 
     0.689
Mnod_3648
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll6824 ABC transporter permease protein.
  
  
 0.613
Mnod_6774
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_6380 binding-protein-dependent transport systems inner membrane component.
  
  
 0.613
Mnod_3644
KEGG: bpy:Bphyt_6149 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.526
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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