STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0104PFAM: short-chain dehydrogenase/reductase SDR; KEGG: met:M446_1731 short-chain dehydrogenase/reductase SDR. (278 aa)    
Predicted Functional Partners:
Mnod_0105
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bbt:BBta_0175 putative hydratase/decarboxylase.
     
 0.776
Mnod_1942
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_0320 short-chain dehydrogenase/reductase SDR.
  
   0.654
Mnod_4423
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_3398 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.559
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 
 0.510
Mnod_1232
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A0908 short chain dehydrogenase/reductase family oxidoreductase.
 
    0.448
Mnod_3359
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; KEGG: xau:Xaut_0907 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase.
  
 0.422
Mnod_0102
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4740 binding-protein-dependent transport systems inner membrane component.
  
    0.400
Mnod_0103
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_4741 binding-protein-dependent transport systems inner membrane component.
  
    0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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