STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0107KEGG: met:M446_4743 TRAP-type uncharacterized transport system periplasmic component-like protein. (453 aa)    
Predicted Functional Partners:
Mnod_4360
KEGG: mex:Mext_4583 polysaccharide biosynthesis protein.
  
     0.759
Mnod_5195
KEGG: met:M446_4457 hypothetical protein.
  
     0.757
Mnod_0676
KEGG: met:M446_1766 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.749
Mnod_4496
KEGG: met:M446_4563 hypothetical protein.
  
     0.727
Mnod_5605
SMART: Parallel beta-helix repeat; KEGG: mpo:Mpop_4608 hemolysin-type calcium-binding region.
  
     0.719
Mnod_1108
KEGG: met:M446_2137 hypothetical protein.
  
     0.718
Mnod_3737
KEGG: mpo:Mpop_1316 hypothetical protein.
  
     0.714
Mnod_2847
KEGG: met:M446_2364 hypothetical protein.
  
     0.712
Mnod_0156
KEGG: met:M446_4603 hypothetical protein.
  
     0.708
Mnod_1049
PFAM: cyclic nucleotide-binding; KEGG: met:M446_1668 cyclic nucleotide-binding protein.
  
     0.701
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.