STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0140TIGRFAM: hydrolase, peptidase M42 family; PFAM: peptidase M20; peptidase M42 family protein; KEGG: met:M446_2678 peptidase M42 family hydrolase. (399 aa)    
Predicted Functional Partners:
Mnod_0141
TIGRFAM: GNAT-family acetyltransferase TIGR03103; PFAM: phosphoribosylglycinamide synthetase; GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp; KEGG: met:M446_2679 GNAT family acetyltransferase.
 
  
 0.979
Mnod_0142
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: met:M446_2680 asparagine synthase amidotransferase.
 
  
 0.957
Mnod_0139
KEGG: met:M446_2676 hypothetical protein.
 
     0.581
Mnod_6993
Asparagine synthase; PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: rca:Rcas_2336 asparagine synthetase B.
 
  
 0.538
Mnod_0143
PFAM: response regulator receiver; KEGG: met:M446_2682 response regulator receiver protein.
       0.471
Mnod_7546
KEGG: met:M446_6807 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: aminoglycoside phosphotransferase; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
   
  
 0.402
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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