STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0177PFAM: protein of unknown function DUF1328; KEGG: met:M446_3661 hypothetical protein. (57 aa)    
Predicted Functional Partners:
Mnod_6133
PFAM: transport-associated; KEGG: mrd:Mrad2831_2622 transport-associated.
 
    0.735
Mnod_3914
PFAM: CsbD family protein; KEGG: met:M446_1539 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.706
Mnod_6209
PFAM: CsbD family protein; KEGG: mrd:Mrad2831_0279 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.706
Mnod_7336
PFAM: CsbD family protein; KEGG: ret:RHE_CH01802 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.706
Mnod_6174
PFAM: CBS domain containing protein; transport-associated; SMART: Transport-associated and nodulation region; KEGG: met:M446_3570 CBS domain-containing protein.
  
    0.656
Mnod_0086
PFAM: CsbD family protein; KEGG: met:M446_0717 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.608
Mnod_0951
PFAM: CsbD family protein; KEGG: acr:Acry_3194 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.608
Mnod_1668
PFAM: CsbD family protein; KEGG: met:M446_0717 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.608
ccmC
Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
       0.566
Mnod_0833
PFAM: Calcium-binding EF-hand-containing protein; KEGG: met:M446_0152 signal transduction protein.
  
     0.543
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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