Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0213TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: met:M446_3148 PepF/M3 family oligoendopeptidase. (616 aa)    
Predicted Functional Partners:
metXA
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
 
    0.650
Mnod_0214
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: met:M446_3149 two component, sigma54 specific, fis family transcriptional regulator.
       0.592
Mnod_4715
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: met:M446_4200 flagellar motor switch protein FliM.
   
   0.564
Mnod_0379
PFAM: protein of unknown function DUF1058; KEGG: met:M446_2231 hypothetical protein.
  
     0.464
Mnod_0216
Protein of unknown function DUF882; PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; protein of unknown function DUF882; Peptidase M15A; KEGG: met:M446_3151 hypothetical protein.
 
     0.445
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.440
Mnod_0757
TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; 3-carboxy-ciscis-muconate cycloisomerase; KEGG: bja:bll7942 3-carboxy-cis,cis-muconate cycloisomerase.
  
    0.436
Mnod_2084
PFAM: fumarate lyase; KEGG: met:M446_4654 fumarate lyase.
  
    0.436
Mnod_7577
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: met:M446_6842 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.436
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
 
  
 0.424
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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