STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0215PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_3150 peptidoglycan binding domain-containing protein. (670 aa)    
Predicted Functional Partners:
Mnod_0216
Protein of unknown function DUF882; PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; protein of unknown function DUF882; Peptidase M15A; KEGG: met:M446_3151 hypothetical protein.
 
   
 0.887
Mnod_0214
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: met:M446_3149 two component, sigma54 specific, fis family transcriptional regulator.
       0.608
Mnod_1139
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: met:M446_2176 peptidase U6 penicillin-insensitive murein endopeptidase.
  
     0.497
Mnod_5739
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: met:M446_2176 peptidase U6 penicillin-insensitive murein endopeptidase.
  
     0.485
Mnod_5898
KEGG: met:M446_5308 hypothetical protein.
  
   
 0.421
Mnod_0213
TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: met:M446_3148 PepF/M3 family oligoendopeptidase.
       0.416
Mnod_4595
KEGG: met:M446_4794 hypothetical protein.
  
   
 0.402
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.